PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007473-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 139aa    MW: 15696.2 Da    PI: 9.816
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007473-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.42.2e-071660655
                   HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                   + + r+RR++i ++ +eL +l+P  +      K++ ae+ + A +Y+k Lq
  NNU_007473-RA 16 SVAARQRRRKITEKTQELGKLIPGgN------KMTTAEMFQAAFKYVKFLQ 60
                   5677*******************955......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.2581059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-121268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.46E-81363No hitNo description
Gene3DG3DSA:4.10.280.101.3E-101364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-91665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-51760IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MDDKKKANRG NMSTQSVAAR QRRRKITEKT QELGKLIPGG NKMTTAEMFQ AAFKYVKFLQ  60
AQVGILEFMG SIFQETGKDQ FHIEKLQVLV SPTIQEKLYL EEKCLVPLGS VQTIAKDHDI  120
QSNPLISEGL KLFGQSEHL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324KKKANRGNMSTQSVAARQRRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257106.13e-99PREDICTED: transcription factor bHLH53-like
SwissprotQ84RD02e-28BH053_ARATH; Transcription factor bHLH53
TrEMBLB9GGH43e-49B9GGH4_POPTR; Basic helix-loop-helix family protein
TrEMBLG3MDB12e-49G3MDB1_9R
STRINGPOPTR_0001s46530.17e-49(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-29bHLH family protein